Many fungi and bacteria produce antibiotics. It just so happened that Alexander Fleming observed the killing effect caused by a mould from Penicillium genus. This was caused by the compound we now call Penicillin. This was therefore the first antibiotic which became commercially available.
Another example of an antibiotic produced by a microorganism is Erythromycin. This actually kills more bugs than penicillin and is slightly less prone to developing resistance. It also is better at killing strange bugs. It is much more structurally complex than Penicillin (which is probably why it took a lot longer to be isolated and used as a drug). It is still produced by growing a lot of the actinomycete called Saccharopolyspora erythraea and then purifying the drug from the medium in which the bug is growing.
We are likely to discover more antibiotics as we discover more microorganisms. It is quite a common thing for them to produce.
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